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1

GETPrime: a gene- or transcript-specific primer database for quantitative real-time PCR

Gubelmann, C., Gattiker, A., Massouras, A., Hens, K., David, F., Decouttere, F., Rougemont, J., Deplancke, B.

Journal:

Year:

2011

Language:

english

File:

PDF, 1.40 MB

english, 2011

2

The Human Cell Atlas

Regev, Aviv, Teichmann, Sarah A, Lander, Eric S, Amit, Ido, Benoist, Christophe, Birney, Ewan, Bodenmiller, Bernd, Campbell, Peter, Carninci, Piero, Clatworthy, Menna, Clevers, Hans, Deplancke, Bart,

Journal:

Year:

2017

Language:

english

File:

PDF, 16.27 MB

english, 2017

3

[Methods in Molecular Biology] Gene Regulatory Networks Volume 786 || MITOMI: A Microfluidic Platform for In Vitro Characterization of Transcription Factor–DNA Interaction

Deplancke, Bart, Gheldof, Nele

Year:

2012

Language:

english

File:

PDF, 491 KB

english, 2012

4

Mechanistic Study and Characterization of Cold-Sprayed Ultra-High Molecular Weight Polyethylene-Nano-ceramic Composite Coating

Ravi, Kesavan, Ichikawa, Yuji, Ogawa, Kazuhiro, Deplancke, Tiana, Lame, Olivier, Cavaille, Jean-Yves

Journal:

Journal of Thermal Spray Technology

Year:

2016

Language:

english

File:

PDF, 2.55 MB

english, 2016

5

The Genetics of Transcription Factor DNA Binding Variation

Deplancke, Bart, Alpern, Daniel, Gardeux, Vincent

Journal:

Year:

2016

Language:

english

File:

PDF, 1.82 MB

english, 2016

6

Evaluation of the Tensile Strength of Electron Beam Irradiated Powdered Ultra High Molecular Weight-Polyethylene (UHMWPE) Prior to Sintering

Kanda, Masae, Deplancke, Tiana, Lame, Olivier, Nishi, Yoshitake, Cavaille, Jean-Yves

Journal:

MATERIALS TRANSACTIONS

Year:

2015

Language:

english

File:

PDF, 989 KB

english, 2015

7

Potential Direct Regulators of the Drosophila yellow Gene Identified by Yeast One-Hybrid and RNAi Screens

Kalay, G., Lusk, R., Dome, M., Hens, K., Deplancke, B., Wittkopp, P. J.

Journal:

G3 Genes|Genome|Genetics

Year:

2016

Language:

english

File:

PDF, 2.25 MB

english, 2016

8

Multilevel regulation of the glass locus during Drosophila eye development

Fritsch, Cornelia, Bernardo-Garcia, F. Javier, Humberg, Tim-Henning, Mishra, Abhishek Kumar, Miellet, Sara, Almeida, Silvia, Frochaux, Michael V., Deplancke, Bart, Huber, Armin, Sprecher, Simon G., Ku

Journal:

Year:

2019

Language:

english

File:

PDF, 3.35 MB

english, 2019

9

Protocol for creating new warnings on cigarette packs and evaluating their efficacy in a randomised experimental setting

Ben Lakhdar, Christian, Deplancke, Antoine, Le Lec, Fabrice, Massin, Sophie, Piermatteo, Anthony, Vaillant, Nicolas

Journal:

Year:

2020

File:

PDF, 313 KB

2020

10

Mitochondrial gene signature in the prefrontal cortex for differential susceptibility to chronic stress

Weger, Meltem, Alpern, Daniel, Cherix, Antoine, Ghosal, Sriparna, Grosse, Jocelyn, Russeil, Julie, Gruetter, Rolf, de Kloet, E. Ronald, Deplancke, Bart, Sandi, Carmen

Journal:

Scientific Reports

Year:

2020

File:

PDF, 2.83 MB

2020

11

Intestinal Transport of the Lactokinin Ala-Leu-Pro-Met-His-Ile-Arg through a Caco-2 Bbe Monolayer

V. Vermeirssen, B. Deplancke, K. A. Tappenden, J. Van Camp, H. R. Gaskins, W. Verstraete

Journal:

Journal of Peptide Science

Year:

2002

Language:

english

File:

PDF, 92 KB

english, 2002

12

Do supine position and deprivation of visual environment influence spatial neglect?

Sahawanatou Gassama, Antoine Deplancke, Arnaud Saj, Jacques Honoré, Marc Rousseaux

Journal:

Journal of Neurology

Year:

2011

Language:

english

File:

PDF, 192 KB

english, 2011

13

Primer-initiated sequence synthesis to detect and assemble structural variants

Massouras, Andreas, Hens, Korneel, Gubelmann, Carine, Uplekar, Swapna, Decouttere, Frederik, Rougemont, Jacques, Cole, Stewart T, Deplancke, Bart

Journal:

Year:

2010

Language:

english

File:

PDF, 258 KB

english, 2010

14

Matrix and Steiner-triple-system smart pooling assays for high-performance transcription regulatory network mapping

Vermeirssen, Vanessa, Deplancke, Bart, Barrasa, M Inmaculada, Reece-Hoyes, John S, Arda, H Efsun, Grove, Christian A, Martinez, Natalia J, Sequerra, Reynaldo, Doucette-Stamm, Lynn, Brent, Michael R

Journal:

Year:

2007

Language:

english

File:

PDF, 272 KB

english, 2007

15

Chromatin immunoprecipitation (ChIP) coupled to detection by quantitative real-time PCR to study transcription factor binding to DNA in Caenorhabditis elegans

Mukhopadhyay, Arnab, Deplancke, Bart, Walhout, Albertha J M, Tissenbaum, Heidi A

Journal:

Nature Protocols

Year:

2008

Language:

english

File:

PDF, 316 KB

english, 2008

16

Integrative Genomics Identifies the Corepressor SMRT as a Gatekeeper of Adipogenesis through the Transcription Factors C/EBPβ and KAISO

Sunil K. Raghav, Sebastian M. Waszak, Irina Krier, Carine Gubelmann, Alina Isakova, Tarjei S. Mikkelsen, Bart Deplancke

Journal:

Year:

2012

Language:

english

File:

PDF, 2.01 MB

english, 2012

17

[Methods in Molecular Biology] Gene Regulatory Networks Volume 786 || Analyzing Transcription Factor Occupancy During Embryo Development Using ChIP-seq

Deplancke, Bart, Gheldof, Nele

Year:

2012

Language:

english

File:

PDF, 162 KB

english, 2012

18

C. elegans 14-3-3 proteins regulate life span and interact with SIR-2.1 and DAF-16/FOXO

Yamei Wang, Seung Wook Oh, Bart Deplancke, Jianyuan Luo, Albertha J.M. Walhout, Heidi A. Tissenbaum

Journal:

Mechanisms of Ageing and Development

Year:

2006

Language:

english

File:

PDF, 751 KB

english, 2006

19

[Methods in Molecular Biology] Gene Regulatory Networks Volume 786 || High-Throughput SELEX Determination of DNA Sequences Bound by Transcription Factors In Vitro

Deplancke, Bart, Gheldof, Nele

Year:

2012

Language:

english

File:

PDF, 272 KB

english, 2012

20

A Gene-Centered C. elegans Protein-DNA Interaction Network

Bart Deplancke, Arnab Mukhopadhyay, Wanyuan Ao, Ahmed M. Elewa, Christian A. Grove, Natalia J. Martinez, Reynaldo Sequerra, Lynn Doucette-Stamm, John S. Reece-Hoyes, Ian A. Hope, Heidi A. Tissenbaum,

Journal:

Year:

2006

Language:

english

File:

PDF, 901 KB

english, 2006

21

C. elegans tubby regulates life span and fat storage by two independent mechanisms

Arnab Mukhopadhyay, Bart Deplancke, Albertha J.M. Walhout, Heidi A. Tissenbaum

Journal:

Cell Metabolism

Year:

2005

Language:

english

File:

PDF, 391 KB

english, 2005

22

[Methods in Molecular Biology] Gene Regulatory Networks Volume 786 || BioTapestry: A Tool to Visualize the Dynamic Properties of Gene Regulatory Networks

Deplancke, Bart, Gheldof, Nele

Year:

2012

Language:

english

File:

PDF, 764 KB

english, 2012

23

Variable Outcome of Mutations

Deplancke, B., Verstrepen, K. J.

Journal:

Year:

2012

Language:

english

File:

PDF, 533 KB

english, 2012

24

[Methods in Molecular Biology] Gene Regulatory Networks Volume 786 || Detecting Long-Range Chromatin Interactions Using the Chromosome Conformation Capture Sequencing (4C-seq) Method

Deplancke, Bart, Gheldof, Nele

Year:

2012

Language:

english

File:

PDF, 316 KB

english, 2012

25

PPAR-alpha activator (fenofibrate) restores endothelium responses in spontaneous hypertensive rat

O. Jaboureck, I. Six, D. Deplancke, A. Caillez, J.C. Fruchart, B. Staels, P. Duriez, R. Bordet

Journal:

Atherosclerosis

Year:

2000

Language:

english

File:

PDF, 136 KB

english, 2000

26

Absolute quantification of transcription factors during cellular differentiation using multiplexed targeted proteomics

Simicevic, Jovan, Schmid, Adrien W, Gilardoni, Paola A, Zoller, Benjamin, Raghav, Sunil K, Krier, Irina, Gubelmann, Carine, Lisacek, Frédérique, Naef, Felix, Moniatte, Marc, Deplancke, Bart

Journal:

Year:

2013

Language:

english

File:

PDF, 1.05 MB

english, 2013

27

[Methods in Molecular Biology] Gene Regulatory Networks Volume 786 || CAGE (Cap Analysis of Gene Expression): A Protocol for the Detection of Promoter and Transcriptional Networks

Deplancke, Bart, Gheldof, Nele

Year:

2012

Language:

english

File:

PDF, 457 KB

english, 2012

28

A compendium ofCaenorhabditis elegansregulatory transcription factors: a resource for mapping transcription regulatory networks

John S Reece-Hoyes, Bart Deplancke, Jane Shingles, Christian A Grove…

Journal:

Year:

2005

Language:

english

File:

PDF, 703 KB

english, 2005

29

[Methods in Molecular Biology] Gene Regulatory Networks Volume 786 ||

Deplancke, Bart, Gheldof, Nele

Year:

2012

Language:

english

File:

PDF, 9.52 MB

english, 2012

30

Automated protein-DNA interaction screening of Drosophila regulatory elements

Hens, Korneel, Feuz, Jean-Daniel, Isakova, Alina, Iagovitina, Antonina, Massouras, Andreas, Bryois, Julien, Callaerts, Patrick, Celniker, Susan E, Deplancke, Bart

Journal:

Year:

2011

Language:

english

File:

PDF, 1.26 MB

english, 2011

31

[Methods in Molecular Biology] Gene Regulatory Networks Volume 786 || Using cisTargetX to Predict Transcriptional Targets and Networks in Drosophila

Deplancke, Bart, Gheldof, Nele

Year:

2012

Language:

english

File:

PDF, 1.04 MB

english, 2012

32

[Methods in Molecular Biology] Gene Regulatory Networks Volume 786 || How Do You Find Transcription Factors? Computational Approaches to Compile and Annotate Repertoires of Regulators for Any Genome

Deplancke, Bart, Gheldof, Nele

Year:

2012

Language:

english

File:

PDF, 307 KB

english, 2012

33

Identification and removal of low-complexity sites in allele-specific analysis of ChIP-seq data

Waszak, S. M., Kilpinen, H., Gschwind, A. R., Orioli, A., Raghav, S. K., Witwicki, R. M., Migliavacca, E., Yurovsky, A., Lappalainen, T., Hernandez, N., Reymond, A., Dermitzakis, E. T., Deplancke, B.

Journal:

Year:

2014

Language:

english

File:

PDF, 5.25 MB

english, 2014

34

[Methods in Molecular Biology] Gene Regulatory Networks Volume 786 || Proteomic Methodologies to Study Transcription Factor Function

Deplancke, Bart, Gheldof, Nele

Year:

2012

Language:

english

File:

PDF, 331 KB

english, 2012

35

[Methods in Molecular Biology] Gene Regulatory Networks Volume 786 || Sample Preparation for Small RNA Massive Parallel Sequencing

Deplancke, Bart, Gheldof, Nele

Year:

2012

Language:

english

File:

PDF, 162 KB

english, 2012

36

Morphological and Molecular Characterization of Adult Midgut Compartmentalization in Drosophila

Buchon, Nicolas, Osman, Dani, David, Fabrice P.A., Yu Fang, Hsiao, Boquete, Jean-Philippe, Deplancke, Bart, Lemaitre, Bruno

Journal:

Year:

2013

Language:

english

File:

PDF, 4.92 MB

english, 2013

37

Morphological and Molecular Characterization of Adult Midgut Compartmentalization in Drosophila

Buchon, Nicolas, Osman, Dani, David, Fabrice P.A., Fang, Hsiao Yu, Boquete, Jean-Philippe, Deplancke, Bart, Lemaitre, Bruno

Journal:

Year:

2013

Language:

english

File:

PDF, 46 KB

english, 2013

38

Rounding Up Natural Gene Expression Variation during Development

Waszak, Sebastian M., Deplancke, Bart

Journal:

Developmental Cell

Year:

2013

Language:

english

File:

PDF, 192 KB

english, 2013

39

Diffusion versus Cocrystallization of Very Long Polymer Chains at Interfaces: Experimental Study of Sintering of UHMWPE Nascent Powder

Deplancke, T., Lame, O., Rousset, F., Aguili, I., Seguela, R., Vigier, G.

Journal:

Year:

2014

Language:

english

File:

PDF, 1.37 MB

english, 2014

40

Complex expression dynamics and robustness in C. elegans insulin networks

Ritter, A. D., Shen, Y., Fuxman Bass, J., Jeyaraj, S., Deplancke, B., Mukhopadhyay, A., Xu, J., Driscoll, M., Tissenbaum, H. A., Walhout, A. J. M.

Journal:

Genome Research

Year:

2013

Language:

english

File:

PDF, 2.38 MB

english, 2013

41

A yeast one-hybrid and microfluidics-based pipeline to map mammalian gene regulatory networks

Gubelmann, Carine, Waszak, Sebastian M, Isakova, Alina, Holcombe, Wiebke, Hens, Korneel, Iagovitina, Antonina, Feuz, Jean-Daniel, Raghav, Sunil K, Simicevic, Jovan, Deplancke, Bart

Journal:

Molecular Systems Biology

Year:

2013

Language:

english

File:

PDF, 3.68 MB

english, 2013

42

Context-dependent transcriptional interpretation of mitogen activated protein kinase signaling in the Drosophila embryo

Kim, Yoosik, Iagovitina, Antonina, Ishihara, Keisuke, Fitzgerald, Kate M., Deplancke, Bart, Papatsenko, Dmitri, Shvartsman, Stanislav Y.

Journal:

Chaos An Interdisciplinary Journal of Nonlinear Science

Year:

2013

Language:

english

File:

PDF, 4.17 MB

english, 2013

43

A Gateway-Compatible Yeast One-Hybrid System

Journal:

Genome Research

Year:

2004

Language:

english

File:

PDF, 364 KB

english, 2004

44

iSLIM: a comprehensive approach to mapping and characterizing gene regulatory networks

Rockel, S., Geertz, M., Hens, K., Deplancke, B., Maerkl, S. J.

Journal:

Nucleic Acids Research

Year:

2013

Language:

english

File:

PDF, 2.10 MB

english, 2013

45

A large-scale, in vivo transcription factor screen defines bivalent chromatin as a key property of regulatory factors mediating Drosophila wing development

Schertel, Claus, Albarca, Monica, Rockel-Bauer, Claudia, Kelley, Nicholas W., Bischof, Johannes, Hens, Korneel, van Nimwegen, Erik, Basler, Konrad, Deplancke, Bart

Journal:

Genome Research

Year:

2015

Language:

english

File:

PDF, 4.48 MB

english, 2015

46

[Methods in Molecular Biology] Gene Regulatory Networks Volume 786 || Computational Analysis of Protein–DNA Interactions from ChIP-seq Data

Deplancke, Bart, Gheldof, Nele

Year:

2012

Language:

english

File:

PDF, 248 KB

english, 2012

47

A mammalian transcription factor-specific peptide repository for targeted proteomics

Simicevic, Jovan, Moniatte, Marc, Hamelin, Romain, Ahrné, Erik, Deplancke, Bart

Journal:

Year:

2015

Language:

english

File:

PDF, 345 KB

english, 2015

48

Quantifying ChIP-seq data: a spiking method providing an internal reference for sample-to-sample normalization

Bonhoure, N., Bounova, G., Bernasconi, D., Praz, V., Lammers, F., Canella, D., Willis, I. M., Herr, W., Hernandez, N., Delorenzi, M., Hernandez, N., Delorenzi, M., Deplancke, B., Desvergne, B., Guex,

Journal:

Genome Research

Year:

2014

Language:

english

File:

PDF, 2.13 MB

english, 2014

49

Outstanding cavitation erosion resistance of Ultra High Molecular Weight Polyethylene (UHMWPE) coatings

Deplancke, Tiana, Lame, Olivier, Cavaille, Jean-Yves, Fivel, Marc, Riondet, Michel, Franc, Jean-Pierre

Journal:

Year:

2015

Language:

english

File:

PDF, 4.40 MB

english, 2015

50

Molecular Ecological Analysis of the Succession and Diversity of Sulfate-Reducing Bacteria in the Mouse Gastrointestinal Tract

Deplancke, B., Hristova, K. R., Oakley, H. A., McCracken, V. J., Aminov, R., Mackie, R. I., Gaskins, H. R.

Journal:

Applied and Environmental Microbiology

Year:

2000

Language:

english

File:

PDF, 3.99 MB

english, 2000

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